MicroRNAs expression patterns in the response of poplar woody root to bending stress.
Identifieur interne : 001C49 ( Main/Exploration ); précédent : 001C48; suivant : 001C50MicroRNAs expression patterns in the response of poplar woody root to bending stress.
Auteurs : Miriam Rossi [Italie] ; Dalila Trupiano ; Manuela Tamburro ; Giancarlo Ripabelli ; Antonio Montagnoli ; Donato Chiatante ; Gabriella S. ScippaSource :
- Planta [ 1432-2048 ] ; 2015.
Descripteurs français
- KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Analyse de profil d'expression de gènes (MeSH), Bois (génétique), Bois (physiologie), Données de séquences moléculaires (MeSH), Facteur de croissance végétal (pharmacologie), Gènes de plante (MeSH), Phénomènes biomécaniques (effets des médicaments et des substances chimiques), Populus (effets des médicaments et des substances chimiques), Populus (génétique), Populus (physiologie), Racines de plante (effets des médicaments et des substances chimiques), Racines de plante (génétique), Racines de plante (physiologie), Régions promotrices (génétique) (génétique), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Stress physiologique (effets des médicaments et des substances chimiques), Stress physiologique (génétique), Séquence nucléotidique (MeSH), microARN (génétique), microARN (métabolisme).
- MESH :
- effets des médicaments et des substances chimiques : Phénomènes biomécaniques, Populus, Racines de plante, Régulation de l'expression des gènes végétaux, Stress physiologique.
- génétique : ARN messager, Bois, Populus, Racines de plante, Régions promotrices (génétique), Stress physiologique, microARN.
- métabolisme : ARN messager, microARN.
- pharmacologie : Facteur de croissance végétal.
- physiologie : Bois, Populus, Racines de plante.
- Analyse de profil d'expression de gènes, Données de séquences moléculaires, Gènes de plante, Séquence nucléotidique.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Biomechanical Phenomena (drug effects), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (drug effects), Genes, Plant (MeSH), MicroRNAs (genetics), MicroRNAs (metabolism), Molecular Sequence Data (MeSH), Plant Growth Regulators (pharmacology), Plant Roots (drug effects), Plant Roots (genetics), Plant Roots (physiology), Populus (drug effects), Populus (genetics), Populus (physiology), Promoter Regions, Genetic (genetics), RNA, Messenger (genetics), RNA, Messenger (metabolism), Stress, Physiological (drug effects), Stress, Physiological (genetics), Wood (genetics), Wood (physiology).
- MESH :
- chemical , genetics : MicroRNAs, RNA, Messenger.
- drug effects : Biomechanical Phenomena, Gene Expression Regulation, Plant, Plant Roots, Populus, Stress, Physiological.
- genetics : Plant Roots, Populus, Promoter Regions, Genetic, Stress, Physiological, Wood.
- chemical , metabolism : MicroRNAs, RNA, Messenger.
- chemical , pharmacology : Plant Growth Regulators.
- physiology : Plant Roots, Populus, Wood.
- Base Sequence, Gene Expression Profiling, Genes, Plant, Molecular Sequence Data.
Abstract
MAIN CONCLUSION
The paper reports for the first time, in poplar woody root, the expression of five mechanically-responsive miRNAs. The observed highly complex expression pattern of these miRNAs in the bent root suggest that their expression is not only regulated by tension and compression forces highlighting their role in several important processes, i.e., lateral root formation, lignin deposition, and response to bending stress. Mechanical stress is one of the major abiotic stresses significantly affecting plant stability, growth, survival, and reproduction. Plants have developed complex machineries to detect mechanical perturbations and to improve their anchorage. MicroRNAs (miRNAs), small non-coding RNAs (18-24 nucleotides long), have been shown to regulate various stress-responsive genes, proteins and transcription factors, and play a crucial role in counteracting adverse conditions. Several mechanical stress-responsive miRNAs have been identified in the stem of Populus trichocarpa plants subjected to bending stress. However, despite the pivotal role of woody roots in plant anchorage, molecular mechanisms regulating poplar woody root responses to mechanical stress have still been little investigated. In the present paper, we investigate the spatial and temporal expression pattern of five mechanically-responsive miRNAs in three regions of bent poplar woody taproot and unstressed controls by quantitative RT-PCR analysis. Alignment of the cloned and sequenced amplified fragments confirmed that their nucleotide sequences are homologous to the mechanically-responsive miRNAs identified in bent poplar stem. Computational analysis identified putative target genes for each miRNA in the poplar genome. Additional miRNA target sites were found in several mechanical stress-related factors previously identified in poplar root and a subset of these was further analyzed for expression at the mRNA or protein level. Integrating the results of miRNAs expression patterns and target gene functions with our previous morphological and proteomic data, we concluded that the five miRNAs play crucial regulatory roles in reaction woody formation and lateral root development in mechanically-stressed poplar taproot.
DOI: 10.1007/s00425-015-2311-7
PubMed: 25963516
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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The observed highly complex expression pattern of these miRNAs in the bent root suggest that their expression is not only regulated by tension and compression forces highlighting their role in several important processes, i.e., lateral root formation, lignin deposition, and response to bending stress. Mechanical stress is one of the major abiotic stresses significantly affecting plant stability, growth, survival, and reproduction. Plants have developed complex machineries to detect mechanical perturbations and to improve their anchorage. MicroRNAs (miRNAs), small non-coding RNAs (18-24 nucleotides long), have been shown to regulate various stress-responsive genes, proteins and transcription factors, and play a crucial role in counteracting adverse conditions. Several mechanical stress-responsive miRNAs have been identified in the stem of Populus trichocarpa plants subjected to bending stress. However, despite the pivotal role of woody roots in plant anchorage, molecular mechanisms regulating poplar woody root responses to mechanical stress have still been little investigated. In the present paper, we investigate the spatial and temporal expression pattern of five mechanically-responsive miRNAs in three regions of bent poplar woody taproot and unstressed controls by quantitative RT-PCR analysis. Alignment of the cloned and sequenced amplified fragments confirmed that their nucleotide sequences are homologous to the mechanically-responsive miRNAs identified in bent poplar stem. Computational analysis identified putative target genes for each miRNA in the poplar genome. Additional miRNA target sites were found in several mechanical stress-related factors previously identified in poplar root and a subset of these was further analyzed for expression at the mRNA or protein level. Integrating the results of miRNAs expression patterns and target gene functions with our previous morphological and proteomic data, we concluded that the five miRNAs play crucial regulatory roles in reaction woody formation and lateral root development in mechanically-stressed poplar taproot.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25963516</PMID><DateCompleted><Year>2016</Year><Month>04</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-2048</ISSN><JournalIssue CitedMedium="Internet"><Volume>242</Volume><Issue>1</Issue><PubDate><Year>2015</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Planta</Title><ISOAbbreviation>Planta</ISOAbbreviation></Journal><ArticleTitle>MicroRNAs expression patterns in the response of poplar woody root to bending stress.</ArticleTitle><Pagination><MedlinePgn>339-51</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00425-015-2311-7</ELocationID><Abstract><AbstractText Label="MAIN CONCLUSION" NlmCategory="CONCLUSIONS">The paper reports for the first time, in poplar woody root, the expression of five mechanically-responsive miRNAs. The observed highly complex expression pattern of these miRNAs in the bent root suggest that their expression is not only regulated by tension and compression forces highlighting their role in several important processes, i.e., lateral root formation, lignin deposition, and response to bending stress. Mechanical stress is one of the major abiotic stresses significantly affecting plant stability, growth, survival, and reproduction. Plants have developed complex machineries to detect mechanical perturbations and to improve their anchorage. MicroRNAs (miRNAs), small non-coding RNAs (18-24 nucleotides long), have been shown to regulate various stress-responsive genes, proteins and transcription factors, and play a crucial role in counteracting adverse conditions. Several mechanical stress-responsive miRNAs have been identified in the stem of Populus trichocarpa plants subjected to bending stress. However, despite the pivotal role of woody roots in plant anchorage, molecular mechanisms regulating poplar woody root responses to mechanical stress have still been little investigated. In the present paper, we investigate the spatial and temporal expression pattern of five mechanically-responsive miRNAs in three regions of bent poplar woody taproot and unstressed controls by quantitative RT-PCR analysis. Alignment of the cloned and sequenced amplified fragments confirmed that their nucleotide sequences are homologous to the mechanically-responsive miRNAs identified in bent poplar stem. Computational analysis identified putative target genes for each miRNA in the poplar genome. Additional miRNA target sites were found in several mechanical stress-related factors previously identified in poplar root and a subset of these was further analyzed for expression at the mRNA or protein level. Integrating the results of miRNAs expression patterns and target gene functions with our previous morphological and proteomic data, we concluded that the five miRNAs play crucial regulatory roles in reaction woody formation and lateral root development in mechanically-stressed poplar taproot.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rossi</LastName><ForeName>Miriam</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Dipartimento di Bioscienze e Territorio, University of Molise, C.da Fonte Lappone, 86090, Pesche (IS), Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Trupiano</LastName><ForeName>Dalila</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Tamburro</LastName><ForeName>Manuela</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Ripabelli</LastName><ForeName>Giancarlo</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Montagnoli</LastName><ForeName>Antonio</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Chiatante</LastName><ForeName>Donato</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Scippa</LastName><ForeName>Gabriella S</ForeName><Initials>GS</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>05</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Planta</MedlineTA><NlmUniqueID>1250576</NlmUniqueID><ISSNLinking>0032-0935</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010937">Plant Growth Regulators</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001696" MajorTopicYN="N">Biomechanical Phenomena</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010937" MajorTopicYN="N">Plant Growth Regulators</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="N">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011401" MajorTopicYN="N">Promoter Regions, Genetic</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" 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Giancarlo" uniqKey="Ripabelli G" first="Giancarlo" last="Ripabelli">Giancarlo Ripabelli</name><name sortKey="Scippa, Gabriella S" sort="Scippa, Gabriella S" uniqKey="Scippa G" first="Gabriella S" last="Scippa">Gabriella S. Scippa</name><name sortKey="Tamburro, Manuela" sort="Tamburro, Manuela" uniqKey="Tamburro M" first="Manuela" last="Tamburro">Manuela Tamburro</name><name sortKey="Trupiano, Dalila" sort="Trupiano, Dalila" uniqKey="Trupiano D" first="Dalila" last="Trupiano">Dalila Trupiano</name></noCountry><country name="Italie"><noRegion><name sortKey="Rossi, Miriam" sort="Rossi, Miriam" uniqKey="Rossi M" first="Miriam" last="Rossi">Miriam Rossi</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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